Seurat
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Explore more → **Seurat**
What is Seurat?
Seurat is an R package designed for single-cell RNA sequencing (scRNA-seq) data analysis. It enables researchers to perform quality control, normalization, dimension reduction, clustering, and differential expression analysis to identify cell types and states within complex tissues.
What other technologies are related to Seurat?
Seurat Competitor Technologies
Scanpy
Scanpy is a Python-based single-cell analysis toolkit that provides similar functionalities to Seurat, including data preprocessing, dimensionality reduction, clustering, and differential expression analysis.
Monocle
No summary available
Monocle is another single-cell analysis toolkit, primarily focused on trajectory inference and pseudotime ordering of cells. While it offers overlapping functionalities with Seurat, its emphasis on trajectory analysis makes it a competitor in certain applications.
Seurat Complementary Technologies
Cell Ranger
Cell Ranger is a widely used pipeline for processing raw sequencing data from 10x Genomics single-cell experiments, and its output can be directly used as input for Seurat. It is not a replacement for Seurat, but a tool used in the upstream data processing pipeline.
DESeq2
DESeq2 is a widely used package for differential expression analysis based on negative binomial models. While it's not single-cell specific, it can be applied to pseudobulk data generated from single-cell experiments analyzed with Seurat or other tools. Therefore, it complements Seurat's functionality in differential expression.
Snakemake
Snakemake is a workflow management system that can be used to automate and streamline single-cell analysis pipelines involving Seurat. It helps organize and execute complex workflows with dependencies, but it is not an analysis tool in itself.
Number of organizations that mention technology
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Which job functions commonly mention Seurat?
Bioinformatics
1.3% of all Bioinformatics jobs mention Seurat
View 131
jobs on Sumble
Bioinformatician
1.1% of all Bioinformatician jobs mention Seurat
View 35
jobs on Sumble
Biologist
0.4% of all Biologist jobs mention Seurat
View 164
jobs on Sumble
Scientist
0.1% of all Scientist jobs mention Seurat
View 236
jobs on Sumble
Researcher
94 Researcher jobs mention Seurat
View 94
jobs on Sumble
Which organizations are mentioning Seurat?
Washington University in St. Louis
Educational Services
Fred Hutchinson Cancer Center
Other Services (except Public Administration)
UT Southwestern Medical Center
Health Care and Social Assistance
University of California - San Francisco
Educational Services
Vanderbilt University Medical Center
Health Care and Social Assistance
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