samtools
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Explore more → **samtools**
What is samtools?
Samtools is a suite of programs for interacting with high-throughput sequencing data. It is commonly used for manipulating, analyzing, and formatting BAM (Binary Alignment/Map) files, which store aligned sequence reads. Common operations include sorting, merging, indexing, and converting sequence alignment data.
What other technologies are related to samtools?
samtools Complementary Technologies
BWA
BWA is a read aligner, and its output is commonly piped into samtools for downstream processing such as sorting and indexing.
GATK
GATK is a variant calling toolkit that often uses samtools-processed BAM files as input for variant discovery and analysis.
bedtools
Bedtools works with BAM files (produced/manipulated by samtools) to perform intersection, coverage, and other region-based analyses.
Number of organizations that mention technology
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Which job functions commonly mention samtools?
Bioinformatics
2.6% of all Bioinformatics jobs mention samtools
View 257
jobs on Sumble
Bioinformatician
2.0% of all Bioinformatician jobs mention samtools
View 63
jobs on Sumble
Biologist
0.6% of all Biologist jobs mention samtools
View 279
jobs on Sumble
Scientist
0.1% of all Scientist jobs mention samtools
View 314
jobs on Sumble
Research Scientist
0.1% of all Research Scientist jobs mention samtools
View 26
jobs on Sumble
Which organizations are mentioning samtools?
NYU Langone Health
Health Care and Social Assistance
University Health Network
Health Care and Social Assistance
University of California - San Francisco
Educational Services
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